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Biorxiv : the Preprint Server for Biology|March 10, 2025
Cluster replicability in single-cell and single-nucleus atlases of the mouse brainLeon French, Hamsini Suresh, Jesse GillisGenome Biology|November 10, 2022
A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationshipsRuchi Lohia, Nathan Fox, Jesse GillisNature Protocols|June 12, 2010
Gene function analysis in complex data sets using ErmineJJesse Gillis, Meeta Mistry, Paul PavlidisBMC Neuroscience|September 28, 2013
Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controlsMeeta Mistry, Jesse Gillis, Paul PavlidisNature Communications|June 22, 2026
Cluster replicability in single-cell and single-nucleus atlases of the mouse brainLeon French, Hamsini Suresh, Jesse GillisNature Communications|October 17, 2024
Population variability in X-chromosome inactivation across 10 mammalian speciesJonathan M Werner, John Hover, Jesse GillisBiorxiv : the Preprint Server for Biology|August 8, 2025
The misplaced mouse Pax6 interneuron subclass: A cross-species transcriptomic reassignmentJonathan M Werner, Hamsini Suresh, Jesse GillisBiorxiv : the Preprint Server for Biology|October 31, 2023
Population variability in X-chromosome inactivation across 9 mammalian speciesJonathan M Werner, John Hover, Jesse GillisNucleic Acids Research|April 22, 2022
Coexpression reveals conserved gene programs that co-vary with cell type across kingdomsMegan Crow, Hamsini Suresh, John Lee, et al.Genome Research|March 8, 2022
Pan-human consensus genome significantly improves the accuracy of RNA-seq analysesBenjamin Kaminow, Sara Ballouz, Jesse Gillis, et al.Pageof 16