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Elife|April 6, 2018
An incoherent feedforward loop facilitates adaptive tuning of gene expressionJungeui Hong, Nathan Brandt, Farah Abdul-Rahman, et al.
Proceedings of the National Academy of Sciences of the United States of America|October 13, 2010
Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locusDavid Gresham, Renata Usaite, Susanne Manuela Germann, et al.
Plos One|March 29, 2007
Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strainsJoseph Schacherer, Douglas M Ruderfer, David Gresham, et al.
Elife|January 28, 2020
Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environmentsChristopher A Jackson, Dayanne M Castro, Giuseppe-Antonio Saldi, et al.
Plos Biology|May 27, 2022
Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamicsGrace Avecilla, Julie N Chuong, Fangfei Li, et al.
Plos Genetics|December 19, 2006
Global mapping of transposon locationAbram Gabriel, Johannes Dapprich, Mark Kunkel, et al.
Microbiology Spectrum|June 23, 2025
Obese individuals exhibit distinct temporal gene expression dynamics in response to influenza vaccinationMegan Hockman, Julia Matthews, Michael A Carlock, et al.
Nucleic Acids Research|June 16, 2023
CREEPY: CRISPR-mediated editing of synthetic episomes in yeastYu Zhao, Camila Coelho, Stephanie Lauer, et al.
Plos Computational Biology|March 12, 2019
A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theoryRodoniki Athanasiadou, Benjamin Neymotin, Nathan Brandt, et al.
The Science of the Total Environment|March 17, 2025
Bacterial and DNA contamination of a small freshwater waterway used for drinking water after a large precipitation eventCarolina Oliveira de Santana, Pieter Spealman, David Gresham, et al.
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