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Physical Review Letters|August 27, 2025
Joint Distribution of Nuclear and Cytoplasmic mRNA Levels in Stochastic Models of Gene Expression: Analytical Results and Parameter InferenceYiling Wang, Juraj Szavits-Nossan, Zhixing Cao, et al.Biophysical Journal|August 20, 2020
A Stochastic Model of Gene Expression with Polymerase Recruitment and Pause ReleaseZhixing Cao, Tatiana Filatova, Diego A Oyarzún, et al.Plos Computational Biology|June 2, 2016
Stochastic Simulation of Biomolecular Networks in Dynamic EnvironmentsMargaritis Voliotis, Philipp Thomas, Ramon Grima, et al.Physical Review. E|April 16, 2020
Exact solution of stochastic gene expression models with bursting, cell cycle and replication dynamicsCasper H L Beentjes, Ruben Perez-Carrasco, Ramon GrimaBiorxiv : the Preprint Server for Biology|March 22, 2023
The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-PoissonianDouglas E Weidemann, Abhyudai Singh, Ramon Grima, et al.Journal of the Royal Society, Interface|July 20, 2022
Inference and uncertainty quantification of stochastic gene expression via synthetic modelsKaan Öcal, Michael U Gutmann, Guido Sanguinetti, et al.Mathematical Biosciences|May 6, 2024
Analysis of a detailed multi-stage model of stochastic gene expression using queueing theory and model reductionMuhan Ma, Juraj Szavits-Nossan, Abhyudai Singh, et al.Nature Communications|April 12, 2012
Discreteness-induced concentration inversion in mesoscopic chemical systemsRajesh Ramaswamy, Nélido González-Segredo, Ivo F Sbalzarini, et al.Bioinformatics (Oxford, England)|July 8, 2022
DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in JuliaXiaoming Fu, Xinyi Zhou, Dongyang Gu, et al.Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|May 15, 2015
Noise-induced multistability in chemical systems: Discrete versus continuum modelingAndrew Duncan, Shuohao Liao, Tomáš Vejchodský, et al.Pageof 43