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Biorxiv : the Preprint Server for Biology|February 19, 2024
Inserting Pre-Analytical Chromatographic Priming Runs Significantly Improves Targeted Pathway Proteomics With Sample MultiplexingSteven R Shuken, Qing Yu, Steven P GygiJournal of Proteome Research|April 10, 2024
Inserting Pre-analytical Chromatographic Priming Runs Significantly Improves Targeted Pathway Proteomics with Sample MultiplexingSteven R Shuken, Qing Yu, Steven P GygiBiorxiv : the Preprint Server for Biology|September 26, 2025
Library-Free Multiplexed Targeted Proteomics Enables Quantitative Protein-Level GenotypingSteven R Shuken, Steven P GygiAnalytical Chemistry|October 9, 2023
Deep Proteomic Compound Profiling with the Orbitrap Ascend Tribrid Mass Spectrometer Using Tandem Mass Tags and Real-Time SearchSteven R Shuken, Graeme C McAlister, William D Barshop, et al.Molecular & Cellular Proteomics : MCP|June 20, 2020
The Insulin Receptor Adaptor IRS2 is an APC/C Substrate That Promotes Cell Cycle Protein Expression and a Robust Spindle Assembly CheckpointSandhya Manohar, Qing Yu, Steven P Gygi, et al.Journal of the American Society for Mass Spectrometry|September 10, 2024
Enhanced Sample Multiplexing-Based Targeted Proteomics with Intelligent Data AcquisitionKa Yang, Joao A Paulo, Steven P Gygi, et al.Journal of Proteome Research|June 1, 2023
An Introduction to Mass Spectrometry-Based ProteomicsSteven R ShukenJournal of Proteome Research|May 9, 2018
Streamlined Tandem Mass Tag (SL-TMT) Protocol: An Efficient Strategy for Quantitative (Phospho)proteome Profiling Using Tandem Mass Tag-Synchronous Precursor Selection-MS3José Navarrete-Perea, Qing Yu, Steven P Gygi, et al.Biorxiv : the Preprint Server for Biology|September 26, 2025
Next-Generation Multiplexed Targeted Proteomics Quantifies Post-Translational Modifications, Compound-Protein Interactions, and Disease Biomarkers with High ThroughputSteven R Shuken, Geordon A Frere, Charlotte R Beard, et al.Analytical Chemistry|January 24, 2023
Costs and Benefits of Popular P-Value Correction Methods in Three Models of Quantitative Omic ExperimentsSteven R Shuken, M Windy McNerneyPageof 445