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The Journal of Physical Chemistry. B|January 4, 2012
Computing free energy of a large-scale allosteric transition in adenylate kinase using all atom explicit solvent simulationsDavit A Potoyan, Pavel I Zhuravlev, Garegin A PapoianInternational Journal of Molecular Sciences|June 10, 2022
BIAPSS: A Comprehensive Physicochemical Analyzer of Proteins Undergoing Liquid-Liquid Phase SeparationAleksandra E Badaczewska-Dawid, Vladimir N Uversky, Davit A PotoyanJournal of the American Chemical Society|April 24, 2015
The Acetylation Landscape of the H4 Histone Tail: Disentangling the Interplay between the Specific and Cumulative EffectsDavid Winogradoff, Ignacia Echeverria, Davit A Potoyan, et al.Proceedings of the National Academy of Sciences of the United States of America|December 25, 2015
Molecular stripping in the NF-κB/IκB/DNA genetic regulatory networkDavit A Potoyan, Weihua Zheng, Elizabeth A Komives, et al.Biorxiv : the Preprint Server for Biology|January 16, 2026
3D genome architecture regulates the traffic of transcription factors throughout human chromosomesAmit Das, Ryan R Cheng, Davit A Potoyan, et al.Journal of the American Chemical Society|June 6, 2023
Solution Structure Ensembles of the Open and Closed Forms of the ∼130 kDa Enzyme I via AlphaFold Modeling, Coarse Grained Simulations, and NMRSergey L Sedinkin, Daniel Burns, Divyanshu Shukla, et al.Proceedings of the National Academy of Sciences of the United States of America|July 11, 2018
Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomesMichele Di Pierro, Davit A Potoyan, Peter G Wolynes, et al.Plos Computational Biology|February 17, 2018
A stochastic and dynamical view of pluripotency in mouse embryonic stem cellsYen Ting Lin, Peter G Hufton, Esther J Lee, et al.Nature Communications|November 17, 2021
Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptidesIbraheem Alshareedah, Mahdi Muhammad Moosa, Matthew Pham, et al.Journal of the American Chemical Society|November 30, 2017
Resolving the NFκB Heterodimer Binding Paradox: Strain and Frustration Guide the Binding of Dimeric Transcription FactorsDavit A Potoyan, Carlos Bueno, Weihua Zheng, et al.Pageof 7