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Clinical Proteomics|April 3, 2023
An optimized workflow for MS-based quantitative proteomics of challenging clinical bronchoalveolar lavage fluid (BALF) samplesDanielle O Weise, Monica E Kruk, LeeAnn Higgins, et al.
Journal of Proteome Research|December 25, 2018
QuanTP: A Software Resource for Quantitative Proteo-Transcriptomic Comparative Data Analysis and InformaticsPraveen Kumar, Priyabrata Panigrahi, James Johnson, et al.
Journal of Proteomics|October 23, 2025
Comparative performance of Scribe and database search engines in metaproteomic profiling of a ground-truth microbiome datasetAndrew T Rajczewski, Subina Mehta, Reid Wagner, et al.
Biorxiv : the Preprint Server for Biology|June 6, 2025
Benchmarking Spectral Library and Database Search Approaches for Metaproteomics Using a Ground-Truth Microbiome DatasetAndrew T Rajczewski, Subina Mehta, Reid Wagner, et al.
Scientific Reports|January 4, 2025
Investigating proteogenomic divergence in patient-derived xenograft models of ovarian cancerJesenia M Perez, Jolene M Duda, Joohyun Ryu, et al.
Environmental Microbiome|July 7, 2023
Integrative meta-omics in Galaxy and beyondValerie C Schiml, Francesco Delogu, Praveen Kumar, et al.
Research Square|June 17, 2024
Novel Approach to Exploring Protease Activity and Targets in HIV-associated Obstructive Lung Disease using Combined Proteomic-Peptidomic AnalysisSarah Samorodnitsky, Monica Kruk, Eric F Lock, et al.
Respiratory Research|September 10, 2024
Novel approach to exploring protease activity and targets in HIV-associated obstructive lung disease using combined proteomic-peptidomic analysisSarah Samorodnitsky, Monica Kruk, Eric F Lock, et al.
Genome Biology|February 26, 2026
iPepGen: a modular, immunopeptidogenomic analysis pipeline for discovery, verification, and prioritization of cancer peptide neoantigen candidatesSubina Mehta, Reid Wagner, Katherine T Do, et al.
Biorxiv : the Preprint Server for Biology|April 28, 2025
A modular, Galaxy-based immunopeptidogenomic (iPepGen) analysis pipeline for discovery, verification, and prioritization of candidate cancer neoantigen peptidesSubina Mehta, Reid Wagner, Katherine T Do, et al.
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