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Journal of Biosciences|July 4, 2012
Determination of low-energy structures of a small RNA hairpin using Monte Carlo-based techniquesSudhanshu Shanker, Pradipta BandyopadhyayJournal of Biomolecular Structure & Dynamics|July 19, 2016
How Mg2+ ion and water network affect the stability and structure of non-Watson-Crick base pairs in E. coli loop E of 5S rRNA: a molecular dynamics and reference interaction site model (RISM) studySudhanshu Shanker, Pradipta BandyopadhyayThe Journal of Physical Chemistry. A|September 21, 2011
Monte Carlo temperature basin paving with effective fragment potential: an efficient and fast method for finding low-energy structures of water clusters (H2O)20 and (H2O)25Sudhanshu Shanker, Pradipta BandyopadhyayJournal of Chemical Information and Modeling|May 11, 2023
Predicting Protein-Peptide Interactions: Benchmarking Deep Learning Techniques and a Comparison with Focused DockingSudhanshu Shanker, Michel F SannerBiorxiv : the Preprint Server for Biology|March 30, 2023
Structure-Based Neural Network Protein-Carbohydrate Interaction Predictions at the Residue LevelSamuel W Canner, Sudhanshu Shanker, Jeffrey J GrayFrontiers in Bioinformatics|July 6, 2023
Structure-based neural network protein-carbohydrate interaction predictions at the residue levelSamuel W Canner, Sudhanshu Shanker, Jeffrey J GrayThe Journal of Physical Chemistry Letters|October 3, 2018
Self-Assembly of Nanocubic Molecular Capsules via Solvent-Guided Formation of Rectangular BlocksTakeshi Yamamoto, Hadi Arefi, Sudhanshu Shanker, et al.Bioinformation|February 21, 2012
Hidden markov model for the prediction of transmembrane proteins using MATLABNavaneet Chaturvedi, Sudhanshu Shanker, Vinay Kumar Singh, et al.The Journal of Physical Chemistry Letters|August 22, 2015
Facilitating Minima Search for Large Water Clusters at the MP2 Level via Molecular TailoringJonathan P Furtado, Anuja P Rahalkar, Sudhanshu Shanker, et al.Proceedings of the National Academy of Sciences of the United States of America|September 23, 2021
Shotgun scanning glycomutagenesis: A simple and efficient strategy for constructing and characterizing neoglycoproteinsMingji Li, Xiaolu Zheng, Sudhanshu Shanker, et al.Pageof 1