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Biorxiv : the Preprint Server for Biology|July 3, 2026
Tiny Subsamples and Upsampling Tame Big Data Evolutionary Analysis in PhylogenomicsSudhir Kumar, Koichiro Tamura, Sudip SharmaArxiv|February 20, 2025
R3F: An R package for evolutionary dates, rates, and priors using the relative rate frameworkQiqing Tao, Sudip Sharma, Koichiro Tamura, et al.Molecular Biology and Evolution|December 21, 2024
MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for Adaptive and Green ComputingSudhir Kumar, Glen Stecher, Michael Suleski, et al.Molecular Biology and Evolution|September 25, 2002
Evolutionary distance estimation under heterogeneous substitution pattern among lineagesKoichiro Tamura, Sudhir KumarBiorxiv : the Preprint Server for Biology|May 15, 2024
Discovering Fragile Clades And Causal Sequences In Phylogenomics By Evolutionary Sparse LearningSudip Sharma, Sudhir KumarMolecular Biology and Evolution|October 28, 2022
Taming the Selection of Optimal Substitution Models in Phylogenomics by Site Subsampling and UpsamplingSudip Sharma, Sudhir KumarMolecular Biology and Evolution|August 3, 2021
Evolutionary Sparse Learning for PhylogenomicsSudhir Kumar, Sudip SharmaMolecular Biology and Evolution|November 18, 2025
Robust and Efficient Confidence Limits for Phylogenomic Inference of Organismal RelationshipsSudip Sharma, Sudhir KumarNature Computational Science|November 4, 2021
Fast and accurate bootstrap confidence limits on genome-scale phylogenies using little bootstrapsSudip Sharma, Sudhir KumarMolecular Biology and Evolution|June 25, 2024
Discovering Fragile Clades and Causal Sequences in Phylogenomics by Evolutionary Sparse LearningSudip Sharma, Sudhir KumarPageof 135