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Biorxiv : the Preprint Server for Biology|February 3, 2025
RNAbpFlow: Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generationSumit Tarafder, Debswapna BhattacharyaBiorxiv : the Preprint Server for Biology|November 14, 2023
lociPARSE: a locality-aware invariant point attention model for scoring RNA 3D structuresSumit Tarafder, Debswapna BhattacharyaBioinformatics Advances|May 4, 2026
PARSEbp: pairwise agreement-based RNA scoring with emphasis on base pairingsSumit Tarafder, Debswapna BhattacharyaBiorxiv : the Preprint Server for Biology|November 24, 2025
PARSEbp: Pairwise Agreement-based RNA Scoring with Emphasis on Base PairingsSumit Tarafder, Debswapna BhattacharyaJournal of Chemical Information and Modeling|November 11, 2024
lociPARSE: A Locality-aware Invariant Point Attention Model for Scoring RNA 3D StructuresSumit Tarafder, Debswapna BhattacharyaNature Methods|July 1, 2026
RNAbpFlow: base pair-augmented SE(3) flow matching for conditional RNA 3D structure generationSumit Tarafder, Debswapna BhattacharyaBiology Methods & Protocols|July 15, 2024
The landscape of RNA 3D structure modeling with transformer networksSumit Tarafder, Rahmatullah Roche, Debswapna BhattacharyaSTAR Protocols|April 19, 2026
A protocol for single-sequence protein-RNA complex structure prediction using ProRNA3D-singleRahmatullah Roche, Sumit Tarafder, Debswapna BhattacharyaCell Systems|September 17, 2025
Single-sequence protein-RNA complex structure prediction by geometric attention-enabled pairing of biological language modelsRahmatullah Roche, Sumit Tarafder, Debswapna BhattacharyaBiorxiv : the Preprint Server for Biology|August 2, 2024
Single-sequence protein-RNA complex structure prediction by geometric attention-enabled pairing of biological language modelsRahmatullah Roche, Sumit Tarafder, Debswapna BhattacharyaPageof 6