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Journal of Molecular Biology|June 25, 2023
iQDeep: an integrated web server for protein scoring using multiscale deep learning modelsMd Hossain Shuvo, Mohimenul Karim, Debswapna Bhattacharya
Bioinformatics (Oxford, England)|June 3, 2025
NEFFy: a versatile tool for computing the number of effective sequencesMaryam Haghani, Debswapna Bhattacharya, T M Murali
Bioinformatics (Oxford, England)|July 14, 2020
QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networksMd Hossain Shuvo, Sutanu Bhattacharya, Debswapna Bhattacharya
Nucleic Acids Research|May 17, 2021
DeepRefiner: high-accuracy protein structure refinement by deep network calibrationMd Hossain Shuvo, Muhammad Gulfam, Debswapna Bhattacharya
Plos One|February 14, 2020
SPECS: Integration of side-chain orientation and global distance-based measures for improved evaluation of protein structural modelsRahul Alapati, Md Hossain Shuvo, Debswapna Bhattacharya
Bioinformatics (Oxford, England)|May 7, 2016
FRAGSION: ultra-fast protein fragment library generation by IOHMM samplingDebswapna Bhattacharya, Badri Adhikari, Jilong Li, et al.
Nucleic Acids Research|May 1, 2016
3Drefine: an interactive web server for efficient protein structure refinementDebswapna Bhattacharya, Jackson Nowotny, Renzhi Cao, et al.
Proteins|May 15, 2015
CONFOLD: Residue-residue contact-guided ab initio protein foldingBadri Adhikari, Debswapna Bhattacharya, Renzhi Cao, et al.
Methods in Molecular Biology (Clifton, N.J.)|October 28, 2016
Assessing Predicted Contacts for Building Protein Three-Dimensional ModelsBadri Adhikari, Debswapna Bhattacharya, Renzhi Cao, et al.
Proteins|October 2, 2021
DisCovER: distance- and orientation-based covariational threading for weakly homologous proteinsSutanu Bhattacharya, Rahmatullah Roche, Bernard Moussad, et al.
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