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Bioinformatics (Oxford, England)|February 21, 2006
Structural bioinformatics of DNA: a web-based tool for the analysis of molecular dynamics results and structure predictionSurjit B Dixit, David L BeveridgeJournal of Computer-Aided Molecular Design|December 21, 2005
Can free energy calculations be fast and accurate at the same time? Binding of low-affinity, non-peptide inhibitors to the SH2 domain of the src proteinChristophe Chipot, Xavier Rozanska, Surjit B DixitJournal of Biosciences|July 4, 2012
Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulationsSurjit B Dixit, Mihaly Mezei, David L BeveridgeBiopolymers|November 5, 2004
Structure and axis curvature in two dA6 x dT6 DNA oligonucleotides: comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopySurjit B Dixit, Felicia Pitici, D L BeveridgeJournal of Chemical Information and Modeling|May 23, 2006
Root mean square deviation probability analysis of molecular dynamics trajectories on DNASurjit B Dixit, Sergei Y Ponomarev, David L BeveridgeBiophysical Journal|February 26, 2005
Induced fit and the entropy of structural adaptation in the complexation of CAP and lambda-repressor with cognate DNA sequencesSurjit B Dixit, David Q Andrews, D L BeveridgeMethods (San Diego, Calif.)|November 12, 2013
Protein engineering and the use of molecular modeling and simulation: the case of heterodimeric Fc engineeringThomas Spreter Von Kreudenstein, Paula I Lario, Surjit B DixitBiophysical Journal|March 11, 2008
Prokaryotic gene finding based on physicochemical characteristics of codons calculated from molecular dynamics simulationsPoonam Singhal, B Jayaram, Surjit B Dixit, et al.Biopolymers|February 3, 2004
Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premeltingD L Beveridge, Surjit B Dixit, Gabriela Barreiro, et al.Plos Pathogens|January 14, 2012
Human subtilase SKI-1/S1P is a master regulator of the HCV Lifecycle and a potential host cell target for developing indirect-acting antiviral agentsAndrea D Olmstead, Wolfgang Knecht, Ina Lazarov, et al.Pageof 2