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BMC Bioinformatics|August 28, 2014
MendeLIMS: a web-based laboratory information management system for clinical genome sequencingSusan M Grimes, Hanlee P JiGenome Medicine|October 29, 2015
The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical-genomic driver associationsHoJoon Lee, Jennifer Palm, Susan M Grimes, et al.Genome Biology|December 7, 2021
Single-cell characterization of CRISPR-modified transcript isoforms with nanopore sequencingHeon Seok Kim, Susan M Grimes, Anna C Hooker, et al.NAR Genomics and Bioinformatics|November 3, 2025
Single-cell aneuploidy and chromosomal arm imbalances define subclones with divergent transcriptomic phenotypesXiangqi Bai, Billy T Lau, Anuja Sathe, et al.Nucleic Acids Research|April 27, 2022
KmerKeys: a web resource for searching indexed genome assemblies and variantsDmitri S Pavlichin, HoJoon Lee, Stephanie U Greer, et al.Nucleic Acids Research|May 1, 2014
A programmable method for massively parallel targeted sequencingErik S Hopmans, Georges Natsoulis, John M Bell, et al.Nature Communications|February 8, 2017
CRISPR-Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysisGiWon Shin, Susan M Grimes, HoJoon Lee, et al.NAR Cancer|January 6, 2022
Characterization of the consensus mucosal microbiome of colorectal cancerLan Zhao, Susan M Grimes, Stephanie U Greer, et al.Scientific Reports|March 16, 2019
Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid modelJiamin Chen, Billy T Lau, Noemi Andor, et al.Frontiers in Genetics|February 28, 2025
Distinct gene signatures define the epithelial cell features of mucinous appendiceal neoplasms and pseudomyxoma metastasesCarlos Ayala, Anuja Sathe, Xiangqi Bai, et al.Pageof 11