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Proceedings of the National Academy of Sciences of the United States of America|August 30, 2019
Leveraging protein dynamics to identify cancer mutational hotspots using 3D structuresSushant Kumar, Declan Clarke, Mark B GersteinJournal of Structural Biology|February 21, 2012
Novel insights through the integration of structural and functional genomics data with protein networksDeclan Clarke, Nitin Bhardwaj, Mark B GersteinNucleic Acids Research|December 5, 2016
Localized structural frustration for evaluating the impact of sequence variantsSushant Kumar, Declan Clarke, Mark GersteinNucleic Acids Research|December 17, 2025
DNA shape and epigenomics distinguish the mechanistic origin of human genomic structural variationsNadejda B Boev, Mark B Gerstein, Sushant KumarGenome Biology|November 10, 2020
SVFX: a machine learning framework to quantify the pathogenicity of structural variantsSushant Kumar, Arif Harmanci, Jagath Vytheeswaran, et al.Protein Science : a Publication of the Protein Society|August 10, 2011
Integration of protein motions with molecular networks reveals different mechanisms for permanent and transient interactionsNitin Bhardwaj, Alexej Abyzov, Declan Clarke, et al.Current Opinion in Structural Biology|December 15, 2015
Reads meet rotamers: structural biology in the age of deep sequencingAnurag Sethi, Declan Clarke, Jieming Chen, et al.Structure (London, England : 1993)|April 13, 2016
Identifying Allosteric Hotspots with Dynamics: Application to Inter- and Intra-species ConservationDeclan Clarke, Anurag Sethi, Shantao Li, et al.Genome Biology|August 24, 2006
A computational approach for identifying pseudogenes in the ENCODE regionsDeyou Zheng, Mark B GersteinTrends in Genetics : TIG|March 27, 2007
The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?Deyou Zheng, Mark B GersteinPageof 37