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Arxiv|July 10, 2026
scMTNI: Leveraging cellular trajectory and context to infer dynamic GRNs from single-cell multi-omics dataSuvojit Hazra, Chandrani Kumari, Sushmita RoyArxiv|July 10, 2026
MERLIN-SUITE: Probabilistic modular GRN inference from multi-omics data integrating regulatory priors and transcription factor activitySuvojit Hazra, Marina Kotvanova, Kirstan Gimse, et al.Annual Review of Genomics and Human Genetics|April 21, 2026
Modeling Dynamics, Cell Type Specificity, and Perturbations in Gene Regulatory NetworksJunha Shin, Spencer Halberg-Spencer, Yuda Liu, et al.Plos One|April 17, 2024
MMM and MMMSynth: Clustering of heterogeneous tabular data, and synthetic data generationChandrani Kumari, Rahul SiddharthanLife Sciences|July 18, 2020
Matrix metallopeptidase 9 as a host protein target of chloroquine and melatonin for immunoregulation in COVID-19: A network-based meta-analysisSuvojit Hazra, Alok Ghosh Chaudhuri, Basant K Tiwary, et al.Scientific Reports|October 13, 2022
Integrated network-based multiple computational analyses for identification of co-expressed candidate genes associated with neurological manifestations of COVID-19Suvojit Hazra, Alok Ghosh Chaudhuri, Basant K Tiwary, et al.FEMS Yeast Research|October 10, 2015
Evolution of regulatory networks in Candida glabrata: learning to live with the human hostSushmita Roy, Dawn ThompsonGenome Research|April 21, 2017
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processesSushmita Roy, Rupa SridharanCell Reports Methods|September 26, 2023
Predicting patient-specific enhancer-promoter interactionsBrittany Baur, Sushmita RoyCurrent Opinion in Systems Biology|October 31, 2017
Inference of cell type specific regulatory networks on mammalian lineagesDeborah Chasman, Sushmita RoyPageof 13