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Bioinformatics (Oxford, England)|May 30, 2009
A geometric approach for classification and comparison of structural variantsSuzanne Sindi, Elena Helman, Ali Bashir, et al.Bioinformatics (Oxford, England)|October 31, 2014
Characterization of structural variants with single molecule and hybrid sequencing approachesAnna Ritz, Ali Bashir, Suzanne Sindi, et al.Bioinformatics (Oxford, England)|April 10, 2010
Structural variation analysis with strobe readsAnna Ritz, Ali Bashir, Benjamin J RaphaelPlos Computational Biology|April 12, 2008
Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancerAli Bashir, Stanislav Volik, Colin Collins, et al.Bioinformatics (Oxford, England)|September 4, 2007
Optimization of primer design for the detection of variable genomic lesions in cancerAli Bashir, Yu-Tsueng Liu, Benjamin J Raphael, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 10, 2010
Optimizing PCR assays for DNA-based cancer diagnosticsAli Bashir, Qing Lu, Dennis Carson, et al.Mathematical Biosciences|May 23, 2018
Modeling transposable element dynamics with fragmentation equationsMario Banuelos, Suzanne SindiPlos Computational Biology|July 1, 2022
A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmissionFabian Santiago, Suzanne SindiThe Journal of Biological Chemistry|February 2, 2020
How and why to build a mathematical model: A case study using prion aggregationMikahl Banwarth-Kuhn, Suzanne SindiAccess Microbiology|July 10, 2023
Going through phages: a computational approach to revealing the role of prophage in Staphylococcus aureusTyrome Sweet, Suzanne Sindi, Mark SistromPageof 25