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Journal of Molecular Biology|October 10, 2017
F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment AssemblySwati Jain, Tamar SchlickJournal of Structural Biology|December 25, 2019
Inverse folding with RNA-As-Graphs produces a large pool of candidate sequences with target topologiesSwati Jain, Yunwen Tao, Tamar SchlickResearch Square|January 12, 2022
Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppressionShuting Yan, Qiyao Zhu, Swati Jain, et al.Nature Communications|July 25, 2022
Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppressionShuting Yan, Qiyao Zhu, Swati Jain, et al.Methods (San Diego, Calif.)|April 1, 2019
An extended dual graph library and partitioning algorithm applicable to pseudoknotted RNA structuresSwati Jain, Sera Saju, Louis Petingi, et al.Biophysical Journal|October 23, 2020
Structure-altering mutations of the SARS-CoV-2 frameshifting RNA elementTamar Schlick, Qiyao Zhu, Swati Jain, et al.Genes|July 26, 2018
Dual Graph Partitioning Highlights a Small Group of Pseudoknot-Containing RNA SubmotifsSwati Jain, Cigdem S Bayrak, Louis Petingi, et al.Bioinformatics (Oxford, England)|August 3, 2019
RAG-Web: RNA structure prediction/design using RNA-As-GraphsGrace Meng, Marva Tariq, Swati Jain, et al.Nucleic Acids Research|August 24, 2018
A pipeline for computational design of novel RNA-like topologiesSwati Jain, Alain Laederach, Silvia B V Ramos, et al.Biochimica Et Biophysica Acta. General Subjects|January 20, 2020
Identification of novel RNA design candidates by clustering the extended RNA-As-Graphs librarySwati Jain, Qiyao Zhu, Amiel S P Paz, et al.Pageof 36