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Gigascience|April 28, 2017
Calculating the quality of public high-throughput sequencing data to obtain a suitable subset for reanalysis from the Sequence Read ArchiveTazro Ohta, Takeru Nakazato, Hidemasa BonoPlos One|October 30, 2013
Experimental design-based functional mining and characterization of high-throughput sequencing data in the sequence read archiveTakeru Nakazato, Tazro Ohta, Hidemasa BonoNucleic Acids Research|June 6, 2009
Gendoo: functional profiling of gene and disease features using MeSH vocabularyTakeru Nakazato, Hidemasa Bono, Hideo Matsuda, et al.In Silico Biology|April 24, 2008
BioCompass: a novel functional inference tool that utilizes MeSH hierarchy to analyze groups of genesTakeru Nakazato, Toru Takinaka, Hironori Mizuguchi, et al.Gigascience|June 23, 2025
Extraction of biological terms using large language models enhances the usability of metadata in the BioSample databaseShuya Ikeda, Zhaonan Zou, Hidemasa Bono, et al.BMC Genomics|February 13, 2020
Analysis of molecular mechanism for acceleration of polyembryony using gene functional annotation pipeline in Copidosoma floridanumTakuma Sakamoto, Maaya Nishiko, Hidemasa Bono, et al.Drug Discoveries & Therapeutics|March 20, 2018
Construction of a simple evaluation system for the intestinal absorption of an orally administered medicine using Bombyx mori larvaeFumika Ichino, Hidemasa Bono, Takeru Nakazato, et al.BMC Research Notes|July 2, 2024
High expression of serine protease, Brachyurin in the posterior midgut of black soldier fly (Hermetia illucens) during horse dropping processingMegumi Wakuda, Takuma Sakamoto, Akane Tanaka, et al.Methods in Molecular Biology (Clifton, N.J.)|February 13, 2023
Hybrid Genome Assembly of Short and Long Reads in GalaxyTazro Ohta, Yuh ShiwaPlos One|January 25, 2020
All of gene expression (AOE): An integrated index for public gene expression databasesHidemasa BonoPageof 15