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Biorxiv : the Preprint Server for Biology|April 16, 2025
Automated Quality Control of Time-Course Imaging from 3D in vitro culturesEric Cramer, Tamara Lopez-Vidal, Jeanette Johnson, et al.STAR Protocols|June 11, 2026
Protocol for generation, time-course imaging, and automated quality control of 3D spheroid invasion using TRACEQCEric M Cramer, Tamara Lopez-Vidal, Vania Wang, et al.Cell Reports Methods|November 19, 2025
Temporal reassignment and correspondence evaluation with quality control for time-course imaging of 3D cell cultureEric M Cramer, Tamara Lopez-Vidal, Jeanette Johnson, et al.Bioinformatics (Oxford, England)|October 15, 2025
BIWT: a bioinformatics walkthrough for embedding spatial multiomics in agent-based models for virtual cellsDaniel R Bergman, Jeanette A I Johnson, Marwa Naji, et al.Cell|July 27, 2025
Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratoriesJeanette A I Johnson, Daniel R Bergman, Heber L Rocha, et al.Pageof 1