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Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences|August 22, 2022
Recent progress on methods for estimating and updating large phylogeniesPaul Zaharias, Tandy WarnowBioinformatics Advances|March 27, 2023
WITCH-NG: efficient and accurate alignment of datasets with sequence length heterogeneityBaqiao Liu, Tandy WarnowBMC Bioinformatics|December 14, 2011
Fast and accurate methods for phylogenomic analysesJimmy Yang, Tandy WarnowJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 23, 2022
Scalable Species Tree Inference with External ConstraintsBaqiao Liu, Tandy WarnowBMC Genomics|April 18, 2020
Unblended disjoint tree merging using GTM improves species tree estimationVladimir Smirnov, Tandy WarnowMethods in Molecular Biology (Clifton, N.J.)|December 8, 2020
Multiple Sequence Alignment for Large Heterogeneous Datasets Using SATé, PASTA, and UPPTandy Warnow, Siavash MirarabSystematic Biology|March 28, 2015
On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree MethodsSebastien Roch, Tandy WarnowSystematic Biology|July 22, 2020
Phylogeny Estimation Given Sequence Length HeterogeneityVladimir Smirnov, Tandy WarnowAlgorithms for Molecular Biology : AMB|July 19, 2023
Weighted ASTRID: fast and accurate species trees from weighted internode distancesBaqiao Liu, Tandy WarnowMolecular Phylogenetics and Evolution|March 14, 2018
SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search spacePranjal Vachaspati, Tandy WarnowPageof 40