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BMC Genomics|May 11, 2018
SIESTA: enhancing searches for optimal supertrees and species treesPranjal Vachaspati, Tandy WarnowBioinformatics (Oxford, England)|November 30, 2020
MAGUS: Multiple sequence Alignment using Graph clUSteringVladimir Smirnov, Tandy WarnowBioinformatics Advances|May 2, 2023
HMMerge: an ensemble method for multiple sequence alignmentMinhyuk Park, Tandy WarnowBioinformatics (Oxford, England)|September 25, 2016
FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimizationPranjal Vachaspati, Tandy WarnowBioinformatics (Oxford, England)|June 15, 2015
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genesSiavash Mirarab, Tandy WarnowBMC Genomics|October 10, 2015
ASTRID: Accurate Species TRees from Internode DistancesPranjal Vachaspati, Tandy WarnowBioinformatics (Oxford, England)|October 11, 2011
FastSP: linear time calculation of alignment accuracySiavash Mirarab, Tandy WarnowIEEE/ACM Transactions on Computational Biology and Bioinformatics|August 20, 2019
Profile Hidden Markov Models Are Not IdentifiableSrilakshmi Pattabiraman, Tandy WarnowBMC Genomics|February 11, 2017
Scaling statistical multiple sequence alignment to large datasetsMichael Nute, Tandy WarnowPageof 40