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Gigascience|September 8, 2021
VC@Scale: Scalable and high-performance variant calling on cluster environmentsTanveer Ahmad, Zaid Al Ars, H Peter HofsteeBMC Genomics|November 19, 2020
Optimizing performance of GATK workflows using Apache Arrow In-Memory data frameworkTanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, et al.IEEE Transactions on Computational Biology and Bioinformatics|August 14, 2025
GenMPI: Cluster Scalable Variant Calling for Short/Long Reads Sequencing DataTanveer Ahmad, Joseph Schuchart, Zaid Al Ars, et al.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|December 8, 2009
An efficient and high performance linear recursive variable expansion implementation of the Smith-Waterman algorithmLaiq Hasan, Zaid Al-ArsAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|January 19, 2012
GPU-accelerated protein sequence alignmentLaiq Hasan, Marijn Kentie, Zaid Al-ArsPlos One|December 6, 2019
SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis frameworkHamid Mushtaq, Nauman Ahmed, Zaid Al-ArsBMC Research Notes|July 30, 2011
DOPA: GPU-based protein alignment using database and memory access optimizationsLaiq Hasan, Marijn Kentie, Zaid Al-ArsGenes|January 18, 2020
SparkRA: Enabling Big Data Scalability for the GATK RNA-seq Pipeline with Apache SparkZaid Al-Ars, Saiyi Wang, Hamid MushtaqAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|November 25, 2010
High performance and resource efficient biological sequence alignmentLaiq Hasan, Zaid Al-Ars, Mottaqiallah TaouilEvolutionary Bioinformatics Online|March 24, 2018
Efficient Acceleration of the Pair-HMMs Forward Algorithm for GATK HaplotypeCaller on Graphics Processing UnitsShanshan Ren, Koen Bertels, Zaid Al-ArsPageof 35