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Journal of Bioinformatics and Computational Biology|November 8, 2018
Protein function prediction from protein-protein interaction network using gene ontology based neighborhood analysis and physico-chemical featuresSovan Saha, Abhimanyu Prasad, Piyali Chatterjee, et al.Cellular & Molecular Biology Letters|March 29, 2011
PPI_SVM: prediction of protein-protein interactions using machine learning, domain-domain affinities and frequency tablesPiyali Chatterjee, Subhadip Basu, Mahantapas Kundu, et al.IEEE Transactions on Nanobioscience|April 7, 2023
DensePPI: A Novel Image-Based Deep Learning Method for Prediction of Protein-Protein InteractionsAanzil Akram Halsana, Tapas Chakroborty, Anup Kumar Halder, et al.Peerj|June 15, 2019
FunPred 3.0: improved protein function prediction using protein interaction networkSovan Saha, Piyali Chatterjee, Subhadip Basu, et al.Journal of Bioinformatics and Computational Biology|October 17, 2019
Protein function prediction from dynamic protein interaction network using gene expression dataSovan Saha, Abhimanyu Prasad, Piyali Chatterjee, et al.Eclinicalmedicine|June 11, 2025
Clinicians must participate in the development of multimodal AIChristopher R S Banerji, Aroon Bhardwaj Shah, Ben Dabson, et al.The Journal of Pathology. Clinical Research|February 24, 2026
Impact of tissue staining and scanner variation on the performance of pathology foundation models: a study of sarcomas and their mimicsBinghao Chai, Jianan Chen, Paul Cool, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|July 12, 2018
3gClust: Human Protein Cluster AnalysisAnup Kumar Halder, Piyali Chatterjee, Mita Nasipuri, et al.Briefings in Functional Genomics|October 14, 2017
Review of computational methods for virus-host protein interaction prediction: a case study on novel Ebola-human interactionsAnup Kumar Halder, Pritha Dutta, Mahantapas Kundu, et al.Methods (San Diego, Calif.)|November 20, 2019
Aggregated network centrality shows non-random structure of genomic and proteomic networksAnup Kumar Halder, Michał Denkiewicz, Kaustav Sengupta, et al.Pageof 8