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Molecular Biology and Evolution|January 20, 2017
Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing OutbreaksXavier Didelot, Christophe Fraser, Jennifer Gardy, et al.
PLOS Global Public Health|March 24, 2023
The impact of sampling bias on viral phylogeographic reconstructionPengyu Liu, Yexuan Song, Caroline Colijn, et al.
Scientific Reports|February 19, 2016
Effects of memory on the shapes of simple outbreak treesGiacomo Plazzotta, Christopher Kwan, Michael Boyd, et al.
Systematic Biology|February 16, 2022
Analyzing Phylogenetic Trees with a Tree Lattice Coordinate System and a Graph PolynomialPengyu Liu, Priscila Biller, Matthew Gould, et al.
Genome Research|May 22, 2023
A fast and scalable method for inferring phylogenetic networks from trees by aligning lineage taxon stringsLouxin Zhang, Niloufar Abhari, Caroline Colijn, et al.
BMC Infectious Diseases|February 19, 2025
Measles in Canada: modelling outbreaks with variable vaccine coverage and interventionsJennifer McNichol, Javad Valizadeh, Samara Chaudhury, et al.
BMC Public Health|February 14, 2024
The role of vaccine status homophily in the COVID-19 pandemic: a cross-sectional survey with modellingElisha B Are, Kiffer G Card, Caroline Colijn
Plos Computational Biology|March 4, 2026
Quantifying the spatiotemporal dynamics of the first two epidemic waves of SARS-CoV-2 infections in the United StatesRafael Lopes, Yu Lan, Melanie H Chitwood, et al.
Plos Medicine|January 25, 2019
Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from BrazilTarub S Mabud, Maria de Lourdes Delgado Alves, Albert I Ko, et al.
Plos Medicine|March 2, 2019
Correction: Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from BrazilTarub S Mabud, Maria de Lourdes Delgado Alves, Albert I Ko, et al.
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