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Nucleic Acids Research|December 27, 2012
TEAK: topology enrichment analysis framework for detecting activated biological subpathwaysThair Judeh, Cole Johnson, Anuj Kumar, et al.
Bioinformatics (Oxford, England)|December 27, 2011
Optimal structural inference of signaling pathways from unordered and overlapping gene setsLipi R Acharya, Thair Judeh, Guangdi Wang, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|October 26, 2011
GSGS: a computational approach to reconstruct signaling pathway structures from gene setsLipi Acharya, Thair Judeh, Zhansheng Duan, et al.
Source Code for Biology and Medicine|January 15, 2011
SAMMate: a GUI tool for processing short read alignments in SAM/BAM formatGuorong Xu, Nan Deng, Zhiyu Zhao, et al.
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