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Bio-Protocol
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March 4, 2021
BRIDGE: An Open Platform for Reproducible Protein-Ligand Simulations and Free Energy of Binding Calculations
Tharindu Senapathi, Christopher B Barnett, Kevin J Naidoo
Beilstein Journal of Organic Chemistry
|
November 2, 2020
Comparative ligand structural analytics illustrated on variably glycosylated MUC1 antigen-antibody binding
Christopher B Barnett, Tharindu Senapathi, Kevin J Naidoo
Nature Communications
|
April 22, 2026
An in vitro approach for simulating divergent Golgi O-glycosylation of tumor-associated MUC1 from normal MUC1
Abdullateef Nashed, Kyllen Dilsook, Tharindu Senapathi, et al.
Accounts of Chemical Research
|
November 2, 2021
Multidimensional Free Energy and Accelerated Quantum Library Methods Provide a Gateway to Glycoenzyme Conformational, Electronic, and Reaction Mechanisms
Kevin J Naidoo, Tomás Bruce-Chwatt, Tharindu Senapathi, et al.
Journal of Cheminformatics
|
January 12, 2021
Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial
Simon A Bray, Tharindu Senapathi, Christopher B Barnett, et al.
Journal of Chemical Information and Modeling
|
August 19, 2020
BRIDGE: An Open Platform for Reproducible High-Throughput Free Energy Simulations
Tharindu Senapathi, Miroslav Suruzhon, Christopher B Barnett, et al.
Bioinformatics (Oxford, England)
|
February 14, 2019
Biomolecular Reaction and Interaction Dynamics Global Environment (BRIDGE)
Tharindu Senapathi, Simon Bray, Christopher B Barnett, et al.
Chemistry Central Journal
|
March 16, 2018
Rice bran nanofiber composites for stabilization of phytase
Upendra A Rathnayake, Tharindu Senapathi, Chanaka Sandaruwan, et al.
Journal of Pharmaceutical Sciences
|
November 14, 2024
In vitro analysis of XLAsp-P2 peptide loaded cellulose acetate nanofiber for wound healing
Saranya Selvaraj, Monali Perera, Piumika Yapa, et al.
Journal of Chemical Information and Modeling
|
February 25, 2020
ProtoCaller: Robust Automation of Binding Free Energy Calculations
Miroslav Suruzhon, Tharindu Senapathi, Michael S Bodnarchuk, et al.
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Search research articles
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Showing results (1-10 of 11) with videos related to
Sort By:
Page
of 2
Bio-Protocol
|
March 4, 2021
BRIDGE: An Open Platform for Reproducible Protein-Ligand Simulations and Free Energy of Binding Calculations
Tharindu Senapathi, Christopher B Barnett, Kevin J Naidoo
Beilstein Journal of Organic Chemistry
|
November 2, 2020
Comparative ligand structural analytics illustrated on variably glycosylated MUC1 antigen-antibody binding
Christopher B Barnett, Tharindu Senapathi, Kevin J Naidoo
Nature Communications
|
April 22, 2026
An in vitro approach for simulating divergent Golgi O-glycosylation of tumor-associated MUC1 from normal MUC1
Abdullateef Nashed, Kyllen Dilsook, Tharindu Senapathi, et al.
Accounts of Chemical Research
|
November 2, 2021
Multidimensional Free Energy and Accelerated Quantum Library Methods Provide a Gateway to Glycoenzyme Conformational, Electronic, and Reaction Mechanisms
Kevin J Naidoo, Tomás Bruce-Chwatt, Tharindu Senapathi, et al.
Journal of Cheminformatics
|
January 12, 2021
Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial
Simon A Bray, Tharindu Senapathi, Christopher B Barnett, et al.
Journal of Chemical Information and Modeling
|
August 19, 2020
BRIDGE: An Open Platform for Reproducible High-Throughput Free Energy Simulations
Tharindu Senapathi, Miroslav Suruzhon, Christopher B Barnett, et al.
Bioinformatics (Oxford, England)
|
February 14, 2019
Biomolecular Reaction and Interaction Dynamics Global Environment (BRIDGE)
Tharindu Senapathi, Simon Bray, Christopher B Barnett, et al.
Chemistry Central Journal
|
March 16, 2018
Rice bran nanofiber composites for stabilization of phytase
Upendra A Rathnayake, Tharindu Senapathi, Chanaka Sandaruwan, et al.
Journal of Pharmaceutical Sciences
|
November 14, 2024
In vitro analysis of XLAsp-P2 peptide loaded cellulose acetate nanofiber for wound healing
Saranya Selvaraj, Monali Perera, Piumika Yapa, et al.
Journal of Chemical Information and Modeling
|
February 25, 2020
ProtoCaller: Robust Automation of Binding Free Energy Calculations
Miroslav Suruzhon, Tharindu Senapathi, Michael S Bodnarchuk, et al.
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