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Briefings in Bioinformatics|December 3, 2015
Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing dataJunko Tsuji, Zhiping WengJournal of Molecular Biology|August 2, 2015
Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2Thom Vreven, Iain H Moal, Anna Vangone, et al.Genome Informatics. International Conference on Genome Informatics|February 16, 2005
Optimizing protein representations with information theoryJulian Mintseris, Zhiping WengProteins|January 25, 2008
A combination of rescoring and refinement significantly improves protein docking performanceBrian Pierce, Zhiping WengProteins|March 22, 2007
ZRANK: reranking protein docking predictions with an optimized energy functionBrian Pierce, Zhiping WengBiorxiv : the Preprint Server for Biology|February 12, 2026
Natural language-based representation and modeling of RBP bindingShaimae Elhajjajy, Zhiping WengProteins|December 21, 2004
FAST: a novel protein structure alignment algorithmJianhua Zhu, Zhiping WengGenome Informatics. International Conference on Genome Informatics|December 20, 2005
Improvement of TRANSFAC matrices using multiple local alignment of transcription factor binding site sequencesYutao Fu, Zhiping WengTrends in Biotechnology|December 18, 2001
Protein therapeutics: promises and challenges for the 21st centuryZhiping Weng, Charles DeLisiProceedings of the National Academy of Sciences of the United States of America|July 27, 2005
Structure, function, and evolution of transient and obligate protein-protein interactionsJulian Mintseris, Zhiping WengPageof 37