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Plos One|October 14, 2016
DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing DataJunko Tsuji, Zhiping WengBioinformatics (Oxford, England)|March 18, 2020
LogoJS: a Javascript package for creating sequence logos and embedding them in web applicationsHenry Pratt, Zhiping WengNucleic Acids Research|August 19, 2015
Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomesJiali Zhuang, Zhiping WengBioinformatics (Oxford, England)|October 6, 2005
Genome-wide decoding of hierarchical modular structure of transcriptional regulation by cis-element and expression clusteringDmitriy Leyfer, Zhiping WengProteins|April 12, 2002
Docking unbound proteins using shape complementarity, desolvation, and electrostaticsRong Chen, Zhiping WengJournal of Chemical Theory and Computation|November 24, 2015
Deconstructing the ONIOM Hessian: Investigating Method Combinations for Transition StructuresThom Vreven, Lee M Thompson, Susan M Larkin, et al.The Journal of Chemical Physics|January 22, 2008
QM:QM electronic embedding using Mulliken atomic charges: energies and analytic gradients in an ONIOM frameworkHrant P Hratchian, Priya V Parandekar, Krishnan Raghavachari, et al.The Journal of Chemical Physics|October 10, 2009
Using the ONIOM hybrid method to apply equation of motion CCSD to larger systems: benchmarking and comparison with time-dependent density functional theory, configuration interaction singles, and time-dependent Hartree-FockMarco Caricato, Thom Vreven, Gary W Trucks, et al.The Journal of Physical Chemistry. B|July 21, 2006
Computational investigation of irreversible inactivation of the zinc-dependent protease carboxypeptidase AJason B Cross, Thom Vreven, Samy O Meroueh, et al.Pageof 37