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Nucleic Acids Research|December 8, 2025
RetroRules 2026: an expanded database combining biochemical and organic reaction templates for pathway discoveryThomas Duigou, Philippe Meyer, Jean-Loup FaulonACS Synthetic Biology|July 24, 2024
Artificial Intelligence Methods and Models for Retro-Biosynthesis: A Scoping ReviewGuillaume Gricourt, Philippe Meyer, Thomas Duigou, et al.Journal of Cheminformatics|October 15, 2025
Reverse engineering molecules from fingerprints through deterministic enumeration and generative modelsPhilippe Meyer, Thomas Duigou, Guillaume Gricourt, et al.ACS Synthetic Biology|December 17, 2019
Reinforcement Learning for BioretrosynthesisMathilde Koch, Thomas Duigou, Jean-Loup FaulonMethods in Enzymology|September 4, 2018
Enzyme Discovery: Enzyme Selection and Pathway DesignPablo Carbonell, Mathilde Koch, Thomas Duigou, et al.Journal of Cheminformatics|December 21, 2017
Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0Mathilde Koch, Thomas Duigou, Pablo Carbonell, et al.Metabolic Engineering|December 14, 2017
RetroPath2.0: A retrosynthesis workflow for metabolic engineersBaudoin Delépine, Thomas Duigou, Pablo Carbonell, et al.Peerj|January 22, 2024
neo4jsbml: import systems biology markup language data into the graph database Neo4jGuillaume Gricourt, Thomas Duigou, Sandra Dérozier, et al.Nucleic Acids Research|October 16, 2018
RetroRules: a database of reaction rules for engineering biologyThomas Duigou, Melchior du Lac, Pablo Carbonell, et al.Bioinformatics (Oxford, England)|June 17, 2010
Molecular signatures-based prediction of enzyme promiscuityPablo Carbonell, Jean-Loup FaulonPageof 36