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Bioinformatics (Oxford, England)|July 13, 2021
Ryūtō: improved multi-sample transcript assembly for differential transcript expression analysis and moreThomas Gatter, Peter F StadlerBMC Bioinformatics|April 18, 2019
Ryūtō: network-flow based transcriptome reconstructionThomas Gatter, Peter F StadlerJournal of Chemical Theory and Computation|May 4, 2026
Enumeration of Autocatalytic Subsystems in Large Chemical Reaction NetworksRichard Golnik, Thomas Gatter, Peter F Stadler, et al.Algorithms for Molecular Biology : AMB|January 30, 2026
Computing double-pushout graph transformation rules and atom-to-atom maps from KEGG RCLASS dataNora Beier, Thomas Gatter, Jakob L Andersen, et al.Algorithms for Molecular Biology : AMB|June 2, 2021
LazyB: fast and cheap genome assemblyThomas Gatter, Sarah von Löhneysen, Jörg Fallmann, et al.Journal of Cheminformatics|June 17, 2025
Crossover operators for molecular graphs with an application to virtual drug screeningNico Domschke, Bruno J Schmidt, Thomas Gatter, et al.Journal of Mathematical Biology|December 21, 2017
Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problemSonja J Prohaska, Sarah J Berkemer, Fabian Gärtner, et al.Journal of Chemical Information and Modeling|December 3, 2025
SynKit: A Graph-Based Python Framework for Rule-Based Reaction Modeling and AnalysisTieu-Long Phan, Marcos E González Laffitte, Klaus Weinbauer, et al.Current Topics in Microbiology and Immunology|September 5, 2015
Evolution of RNA-Based NetworksPeter F StadlerMethods in Molecular Biology (Clifton, N.J.)|March 19, 2014
Class-specific prediction of ncRNAsPeter F StadlerPageof 47