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Biochimie|August 13, 2011
Protein-coding structured RNAs: A computational survey of conserved RNA secondary structures overlapping coding regions in drosophilidsSven Findeiss, Jan Engelhardt, Sonja J Prohaska, et al.Nucleic Acids Research|January 31, 2012
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure predictionStefan Washietl, Ivo L Hofacker, Peter F Stadler, et al.Journal of Mathematical Biology|December 9, 2017
Inferring phylogenetic trees from the knowledge of rare evolutionary eventsMarc Hellmuth, Maribel Hernandez-Rosales, Yangjing Long, et al.International Journal of Computational Biology and Drug Design|June 1, 2014
Generic strategies for chemical space explorationJakob L Andersen, Christoph Flamm, Daniel Merkle, et al.Journal of Molecular Evolution|January 28, 2022
Evolution of DNA Methylation Across EcdysozoaJan Engelhardt, Oliver Scheer, Peter F Stadler, et al.Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences|November 15, 2017
An intermediate level of abstraction for computational systems chemistryJakob L Andersen, Christoph Flamm, Daniel Merkle, et al.Journal of Bioinformatics and Computational Biology|April 28, 2020
A probabilistic version of Sankoff's maximum parsimony algorithmGábor Balogh, Stephan H Bernhart, Peter F Stadler, et al.Algorithms for Molecular Biology : AMB|February 26, 2016
The paralog-to-contig assignment problem: high quality gene models from fragmented assembliesHenrike Indrischek, Nicolas Wieseke, Peter F Stadler, et al.Bioinformatics (Oxford, England)|April 18, 2019
Automatic curation of large comparative animal MicroRNA datasetsAli M Yazbeck, Peter F Stadler, Kifah Tout, et al.Scientific Data|April 20, 2026
SynRXN: An Open Benchmark and Curated Dataset for Computational Reaction ModelingTieu-Long Phan, Nhu-Ngoc Nguyen Song, Peter F StadlerPageof 47