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Journal of Chemical Theory and Computation|September 22, 2018
Systematic Comparison of Amber and Rosetta Energy Functions for Protein Structure EvaluationAliza B Rubenstein, Kristin Blacklock, Hai Nguyen, et al.Journal of Chemical Information and Modeling|December 26, 2023
X-ray Crystallography Module in MD Simulation Program Amber 2023. Refining the Models of Protein CrystalsOleg Mikhailovskii, Sergei A Izmailov, Yi Xue, et al.The Journal of Biological Chemistry|September 23, 2020
Coupled intra- and interdomain dynamics support domain cross-talk in Pin1Meiling Zhang, Thomas E Frederick, Jamie VanPelt, et al.Biochemistry|February 28, 2007
Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sitesJingyang Chen, François-Yves Dupradeau, David A Case, et al.Protein Science : a Publication of the Protein Society|July 30, 2023
Redesigning methionyl-tRNA synthetase for β-methionine activity with adaptive landscape flattening and experimentsVaitea Opuu, Giuliano Nigro, Christine Lazennec-Schurdevin, et al.Nucleic Acids Research|November 21, 2007
DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamicsJingyang Chen, François-Yves Dupradeau, David A Case, et al.Biomolecules|November 7, 2017
Revealing Accessibility of Cryptic Protein Binding Sites within the Functional Collagen FibrilCody L Hoop, Jie Zhu, Ana Monica Nunes, et al.Journal of Biomolecular NMR|May 23, 2002
Comparison of protein solution structures refined by molecular dynamics simulation in vacuum, with a generalized Born model, and with explicit waterBin Xia, Vickie Tsui, David A Case, et al.Journal of the American Chemical Society|November 3, 2005
Differential solvation and tautomer stability of a model base pair within the minor and major grooves of DNAFrançois-Yves Dupradeau, David A Case, Chengzhi Yu, et al.The Journal of Chemical Physics|November 23, 2006
An accurate and simple quantum model for liquid waterFrancesco Paesani, Wei Zhang, David A Case, et al.Pageof 39