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Journal of the American Chemical Society|October 6, 2016
HIV-1 Capsid Function Is Regulated by Dynamics: Quantitative Atomic-Resolution Insights by Integrating Magic-Angle-Spinning NMR, QM/MM, and MDHuilan Zhang, Guangjin Hou, Manman Lu, et al.Science (New York, N.Y.)|May 23, 2015
RNA structure. Structure of the HIV-1 RNA packaging signalSarah C Keane, Xiao Heng, Kun Lu, et al.Nucleic Acids Research|October 24, 2009
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNARichard Lavery, Krystyna Zakrzewska, David Beveridge, et al.Journal of Fish Biology|August 21, 2023
Northerly range expansion and first confirmed records of the smalltooth sand tiger shark, Odontaspis ferox, in the United Kingdom and IrelandDavid J Curnick, Rob Deaville, Jenny R Bortoluzzi, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
Structure-guided allosteric modulation of the delta opioid receptorJesse I Mobbs, M Deborah Nguyen, Owindeep Deo, et al.Proceedings of the National Academy of Sciences of the United States of America|July 7, 2025
Structure-based discovery of positive allosteric modulators of the A1 adenosine receptorAnh T N Nguyen, Nicolas Panel, Duc Duy Vo, et al.Biophysical Journal|August 25, 2004
Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) stepsDavid L Beveridge, Gabriela Barreiro, K Suzie Byun, et al.Nucleic Acids Research|September 28, 2014
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNAMarco Pasi, John H Maddocks, David Beveridge, et al.Nature Methods|November 17, 2015
Parmbsc1: a refined force field for DNA simulationsIvan Ivani, Pablo D Dans, Agnes Noy, et al.Living Journal of Computational Molecular Science|January 23, 2026
Structure-Based Experimental Datasets for Benchmarking Protein Simulation Force Fields [Article v1.0]Chapin E Cavender, David A Case, Julian C-H Chen, et al.Pageof 39