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Journal of Chemical Theory and Computation|September 9, 2017
Full Protein Sequence Redesign with an MMGBSA Energy FunctionThomas Gaillard, Thomas Simonson
Methods in Molecular Biology (Clifton, N.J.)|November 1, 2025
Transition State-Based Computational Enzyme DesignThomas Gaillard, Thomas Simonson
Journal of Computational Chemistry|July 13, 2010
A large decoy set of protein-protein complexes produced by flexible dockingGuillaume Launay, Thomas Simonson
Journal of Computational Chemistry|December 19, 2009
A molecular mechanics model for imatinib and imatinib:kinase bindingAlexey Aleksandrov, Thomas Simonson
Journal of Molecular Graphics & Modelling|November 22, 2005
Cys(x)His(y)-Zn2+ interactions: possibilities and limitations of a simple pairwise force fieldNicolas Calimet, Thomas Simonson
Proteins|September 5, 2002
Cys(x)His(y)-Zn2+ interactions: thiol vs. thiolate coordinationThomas Simonson, Nicolas Calimet
Journal of Computational Chemistry|July 11, 2008
Molecular mechanics models for tetracycline analogsAlexey Aleksandrov, Thomas Simonson
Journal of Computational Chemistry|July 19, 2006
The tetracycline: Mg2+ complex: a molecular mechanics force fieldAlexey Aleksandrov, Thomas Simonson
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