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BMC Bioinformatics|December 9, 2022
A Poisson reduced-rank regression model for association mapping in sequencing dataTiana Fitzgerald, Andrew Jones, Barbara E EngelhardtNature Communications|June 11, 2024
Optimizing the design of spatial genomic studiesAndrew Jones, Diana Cai, Didong Li, et al.Biorxiv : the Preprint Server for Biology|February 13, 2023
Optimizing the design of spatial genomic studiesAndrew Jones, Diana Cai, Didong Li, et al.Nature Methods|August 17, 2023
Alignment of spatial genomics data using deep Gaussian processesAndrew Jones, F William Townes, Didong Li, et al.The Annals of Applied Statistics|September 25, 2025
CONTRASTIVE LATENT VARIABLE MODELING WITH APPLICATION TO CASE-CONTROL SEQUENCING EXPERIMENTSAndrew Jones, F William Townes, Didong Li, et al.The Annals of Applied Statistics|December 12, 2025
CONTRASTIVE LINEAR REGRESSIONBoyang Zhang, Sarah Nyquist, Andrew Jones, et al.BMC Bioinformatics|July 23, 2020
A robust nonlinear low-dimensional manifold for single cell RNA-seq dataArchit Verma, Barbara E EngelhardtPlos Genetics|September 24, 2010
Analysis of population structure: a unifying framework and novel methods based on sparse factor analysisBarbara E Engelhardt, Matthew StephensNature Methods|December 31, 2022
Nonnegative spatial factorization applied to spatial genomicsF William Townes, Barbara E EngelhardtPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|March 14, 2019
An Optimal Policy for Patient Laboratory Tests in Intensive Care UnitsLi-Fang Cheng, Niranjani Prasad, Barbara E EngelhardtPageof 60