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Methods in Molecular Biology (Clifton, N.J.)|November 22, 2024
Improving Protein Secondary Structure Prediction by Deep Language Models and Transformer NetworksTianqi Wu, Weihang Cheng, Jianlin ChengBioinformatics (Oxford, England)|May 5, 2023
Atomic protein structure refinement using all-atom graph representations and SE(3)-equivariant graph transformerTianqi Wu, Zhiye Guo, Jianlin ChengBioinformatics (Oxford, England)|September 11, 2019
Analysis of several key factors influencing deep learning-based inter-residue contact predictionTianqi Wu, Jie Hou, Badri Adhikari, et al.Proteins|February 4, 2021
Combination of deep neural network with attention mechanism enhances the explainability of protein contact predictionChen Chen, Tianqi Wu, Zhiye Guo, et al.BMC Bioinformatics|January 26, 2021
DeepDist: real-value inter-residue distance prediction with deep residual convolutional networkTianqi Wu, Zhiye Guo, Jie Hou, et al.Proteins|April 16, 2019
Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13Jie Hou, Tianqi Wu, Renzhi Cao, et al.Proteins|July 22, 2021
Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14Jian Liu, Tianqi Wu, Zhiye Guo, et al.Bioinformatics (Oxford, England)|May 7, 2021
Improving deep learning-based protein distance prediction in CASP14Zhiye Guo, Tianqi Wu, Jian Liu, et al.Scientific Reports|June 24, 2021
MULTICOM2 open-source protein structure prediction system powered by deep learning and distance predictionTianqi Wu, Jian Liu, Zhiye Guo, et al.Bioinformatics (Oxford, England)|January 13, 2023
3D-equivariant graph neural networks for protein model quality assessmentChen Chen, Xiao Chen, Alex Morehead, et al.Pageof 41