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Genomics|October 23, 2022
Informing plasmid compatibility with bacterial hosts using protein-protein interaction dataTim Downing, Min Jie Lee, Conor Archbold, et al.Scientific Reports|November 10, 2022
Bacterial plasmid-associated and chromosomal proteins have fundamentally different properties in protein interaction networksTim Downing, Alexander RahmCancer Drug Resistance (Alhambra, Calif.)|September 30, 2022
Aberrant calcium signalling downstream of mutations in TP53 and the PI3K/AKT pathway genes promotes disease progression and therapy resistance in triple negative breast cancerAlex J Eustace, Min Jie Lee, Grace Colley, et al.Microorganisms|September 30, 2016
Tackling Drug Resistant Infection Outbreaks of Global Pandemic Escherichia coli ST131 Using Evolutionary and Epidemiological GenomicsTim DowningGenomics, Proteomics & Bioinformatics|February 3, 2026
Approaches to Studying Virus Pangenome Variation GraphsTim DowningJournal of the Royal Society, Interface|October 11, 2023
A primer on correlation-based dimension reduction methods for multi-omics analysisTim Downing, Nicos AngelopoulosScientific Reports|November 24, 2019
An Escherichia coli ST131 pangenome atlas reveals population structure and evolution across 4,071 isolatesArun Gonzales Decano, Tim DowningBioinformatics Advances|March 23, 2026
Panalyze: automated virus pangenome variation graph construction, analysis and annotationChandana Tennakoon, Thibaut Freville, Tim DowningToxicon : Official Journal of the International Society on Toxinology|June 20, 2018
Potential for dietary exposure to β-N-methylamino-L-alanine and microcystin from a freshwater systemLaura L Scott, Simoné Downing, Tim DowningAccess Microbiology|May 17, 2021
Plasmids shape the diverse accessory resistomes of <i>Escherichia coli</i> ST131Arun Gonzales Decano, Nghia Tran, Hawriya Al-Foori, et al.Pageof 6