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Genome Informatics. International Conference on Genome Informatics|December 20, 2005
Assessing transcription factor motif drift from noisy decoy sequencesTimothy E Reddy, Charles DeLisi, Boris E ShakhnovichPlos Computational Biology|May 16, 2007
Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sitesTimothy E Reddy, Charles DeLisi, Boris E ShakhnovichGenome Informatics. International Conference on Genome Informatics|February 16, 2005
Comparisons of predicted genetic modules: identification of co-expressed genes through module gene flowBoris E Shakhnovich, Timothy E Reddy, Kevin Galinsky, et al.Nucleic Acids Research|January 6, 2007
Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABAA receptor subunit genesTimothy E Reddy, Boris E Shakhnovich, Daniel S Roberts, et al.Genome Informatics. International Conference on Genome Informatics|February 16, 2005
ELISA: a unified, multidimensional view of the protein domain universeBoris E Shakhnovich, John Max Harvey, Charles DelisiGenome Research|March 3, 2005
Protein structure and evolutionary history determine sequence space topologyBoris E Shakhnovich, Eric Deeds, Charles Delisi, et al.Journal of Molecular Biology|January 28, 2003
Functional fingerprints of folds: evidence for correlated structure-function evolutionBoris E Shakhnovich, Nikolay V Dokholyan, Charles DeLisi, et al.BMC Bioinformatics|September 4, 2003
ELISA: structure-function inferences based on statistically significant and evolutionarily inspired observationsBoris E Shakhnovich, John M Harvey, Steve Comeau, et al.Plos Computational Biology|August 17, 2005
Improving the precision of the structure-function relationship by considering phylogenetic contextBoris E ShakhnovichBioinformatics (Oxford, England)|July 29, 2006
Relative contributions of structural designability and functional diversity in molecular evolution of duplicatesBoris E ShakhnovichPageof 17