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Bioinformatics (Oxford, England)|October 30, 2012
SPSens: a software package for stochastic parameter sensitivity analysis of biochemical reaction networksPatrick W Sheppard, Muruhan Rathinam, Mustafa KhammashNature Communications|August 16, 2022
Dynamic cybergenetic control of bacterial co-culture composition via optogenetic feedbackJoaquín Gutiérrez Mena, Sant Kumar, Mustafa KhammashCurrent Opinion in Microbiology|December 1, 2023
Unlocking the potential of optogenetics in microbial applicationsMoritz Benisch, Stephanie K Aoki, Mustafa KhammashACS Synthetic Biology|August 3, 2022
Implementation of a Novel Optogenetic Tool in Mammalian Cells Based on a Split T7 RNA PolymeraseSara Dionisi, Karol Piera, Armin Baumschlager, et al.Journal of Theoretical Biology|December 4, 2010
Stochastic reduction method for biological chemical kinetics using time-scale separationChetan D Pahlajani, Paul J Atzberger, Mustafa KhammashNature Communications|June 8, 2024
Advanced methods for gene network identification and noise decomposition from single-cell dataZhou Fang, Ankit Gupta, Sant Kumar, et al.Proceedings of the National Academy of Sciences of the United States of America|April 15, 2016
Molecular circuits for dynamic noise filteringChristoph Zechner, Georg Seelig, Marc Rullan, et al.Plos Computational Biology|March 15, 2014
Direct solution of the Chemical Master Equation using quantized tensor trainsVladimir Kazeev, Mustafa Khammash, Michael Nip, et al.Nature Communications|March 15, 2020
Cell-in-the-loop pattern formation with optogenetically emulated cell-to-cell signalingMelinda Liu Perkins, Dirk Benzinger, Murat Arcak, et al.Nature Communications|March 11, 2023
A cybergenetic framework for engineering intein-mediated integral feedback control systemsStanislav Anastassov, Maurice Filo, Ching-Hsiang Chang, et al.Pageof 9