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Journal of Evolutionary Biology|July 12, 2025
Intergenic polyA/T tracts explain the propensity of yeast de novo genes to encode transmembrane domainsNikolaos Vakirlis, Timothy FuquaScience Advances|May 29, 2026
De novo promoters emerge more readily from random DNA than from genomic DNATimothy Fuqua, Andreas WagnerGenome Biology and Evolution|July 30, 2026
Emergence biases in molecular evolutionTimothy Fuqua, Nikolaos VakirlisNature Communications|May 21, 2025
The latent cis-regulatory potential of mobile DNA in Escherichia coliTimothy Fuqua, Andreas WagnerElife|December 20, 2024
The emergence and evolution of gene expression in genome regions replete with regulatory motifsTimothy Fuqua, Yiqiao Sun, Andreas WagnerPhilosophical Transactions of the Royal Society of London. Series B, Biological Sciences|April 2, 2023
Mutational scans reveal differential evolvability of Drosophila promoters and enhancersXueying C Li, Timothy Fuqua, Maria Elize van Breugel, et al.Scientific Reports|May 14, 2021
An open-source semi-automated robotics pipeline for embryo immunohistochemistryTimothy Fuqua, Jeff Jordan, Aliaksandr Halavatyi, et al.Plos Computational Biology|January 29, 2025
Spherical harmonics texture extraction for versatile analysis of biological objectsOane Gros, Josiah B Passmore, Noa O Borst, et al.Nature|October 15, 2020
Dense and pleiotropic regulatory information in a developmental enhancerTimothy Fuqua, Jeff Jordan, Maria Elize van Breugel, et al.Developmental Cell|January 10, 2023
Enhancer architecture and chromatin accessibility constrain phenotypic space during Drosophila developmentRafael Galupa, Gilberto Alvarez-Canales, Noa Ottilie Borst, et al.Pageof 1