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Journal of Evolutionary Biology|July 12, 2025
Intergenic polyA/T tracts explain the propensity of yeast de novo genes to encode transmembrane domainsNikolaos Vakirlis, Timothy Fuqua
Genome Biology and Evolution|July 30, 2026
Emergence biases in molecular evolutionTimothy Fuqua, Nikolaos Vakirlis
Methods in Molecular Biology (Clifton, N.J.)|October 10, 2018
Computational Prediction of De Novo Emerged Protein-Coding GenesNikolaos Vakirlis, Aoife McLysaght
Genome Biology and Evolution|January 18, 2026
Degradation determinants are abundant in human noncanonical proteins and minor annotated isoformsClaudio Casola, Adekola Owoyemi, Nikolaos Vakirlis
Molecular Biology and Evolution|March 14, 2023
Intergenic Regions of Saccharomycotina Yeasts are Enriched in Potential to Encode Transmembrane DomainsEmilios Tassios, Christoforos Nikolaou, Nikolaos Vakirlis
Elife|February 19, 2020
Synteny-based analyses indicate that sequence divergence is not the main source of orphan genesNikolaos Vakirlis, Anne-Ruxandra Carvunis, Aoife McLysaght
Science Advances|May 29, 2026
De novo promoters emerge more readily from random DNA than from genomic DNATimothy Fuqua, Andreas Wagner
Nature Communications|May 21, 2025
The latent cis-regulatory potential of mobile DNA in Escherichia coliTimothy Fuqua, Andreas Wagner
Genome Biology and Evolution|November 28, 2025
De Novo Genes: Current Status and Future GoalsClaudio Casola, Victor Luria, Nikolaos Vakirlis, et al.
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