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Cell Reports|December 21, 2022
De novo birth of functional microproteins in the human lineageNikolaos Vakirlis, Zoe Vance, Kate M Duggan, et al.
Genome Biology and Evolution|July 15, 2024
Ancestral Sequence Reconstruction as a Tool to Detect and Study De Novo Gene EmergenceNikolaos Vakirlis, Omer Acar, Vijay Cherupally, et al.
Elife|December 20, 2024
The emergence and evolution of gene expression in genome regions replete with regulatory motifsTimothy Fuqua, Yiqiao Sun, Andreas Wagner
Bioinformatics Advances|February 16, 2026
Machine learning can distinguish orphans that have resulted from sequence divergence beyond recognitionEmilios Tassios, Jori de Leuw, Christoforos Nikolaou, et al.
Yeast (Chichester, England)|April 10, 2019
Evolutionary journey and characterisation of a novel pan-gene associated with beer strains of Saccharomyces cerevisiaeNikolaos Vakirlis, Chandre Monerawela, Gavin McManus, et al.
NAR Genomics and Bioinformatics|November 16, 2022
Distinct chromosomal "niches" in the genome of Saccharomyces cerevisiae provide the background for genomic innovation and shape the fate of gene duplicatesAthanasia Stavropoulou, Emilios Tassios, Maria Kalyva, et al.
Virus Research|February 19, 2020
The plasma membrane Cation binding protein 1 affects accumulation of Potato virus Y in pepper both at the systemic level and in protoplastsDespoina Beris, Konstantinos Kotsaridis, Nikolaos Vakirlis, et al.
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences|April 2, 2023
Mutational scans reveal differential evolvability of Drosophila promoters and enhancersXueying C Li, Timothy Fuqua, Maria Elize van Breugel, et al.
Scientific Reports|May 14, 2021
An open-source semi-automated robotics pipeline for embryo immunohistochemistryTimothy Fuqua, Jeff Jordan, Aliaksandr Halavatyi, et al.
Nature Genetics|May 22, 2024
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeastÉlodie Caudal, Victor Loegler, Fabien Dutreux, et al.
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