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Molecular Biology and Evolution|June 3, 2025
Bayesian Phylodynamic Inference of Multitype Population Trajectories Using Genomic DataTimothy G Vaughan, Tanja StadlerEpidemics|October 26, 2024
Estimating pathogen spread using structured coalescent and birth-death models: A quantitative comparisonSophie Seidel, Tanja Stadler, Timothy G VaughanJournal of the Royal Society, Interface|September 7, 2018
Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth-death modelJoëlle Barido-Sottani, Timothy G Vaughan, Tanja StadlerSystematic Biology|February 28, 2020
A Multitype Birth-Death Model for Bayesian Inference of Lineage-Specific Birth and Death RatesJoëlle Barido-Sottani, Timothy G Vaughan, Tanja StadlerMolecular Biology and Evolution|May 19, 2016
Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic DataDenise Kühnert, Tanja Stadler, Timothy G Vaughan, et al.Proceedings of the National Academy of Sciences of the United States of America|January 4, 2024
Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic dataTimothy G Vaughan, Jérémie Scire, Sarah A Nadeau, et al.Molecular Biology and Evolution|December 11, 2021
Joint Inference of Migration and Reassortment Patterns for Viruses with Segmented GenomesUgnė Stolz, Tanja Stadler, Nicola F Müller, et al.Journal of the Royal Society, Interface|February 28, 2014
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR modelDenise Kühnert, Tanja Stadler, Timothy G Vaughan, et al.Viruses|August 26, 2022
Robust Phylodynamic Analysis of Genetic Sequencing Data from Structured PopulationsJérémie Scire, Joëlle Barido-Sottani, Denise Kühnert, et al.Proceedings of the National Academy of Sciences of the United States of America|July 8, 2020
Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza virusesNicola F Müller, Ugnė Stolz, Gytis Dudas, et al.Pageof 21