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Molecular Biology and Evolution|October 3, 2013
Using an epidemiological model for phylogenetic inference reveals density dependence in HIV transmissionGabriel E Leventhal, Huldrych F Günthard, Sebastian Bonhoeffer, et al.
Epidemics|May 23, 2022
Advancing genomic epidemiology by addressing the bioinformatics bottleneck: Challenges, design principles, and a Swiss exampleChaoran Chen, Sarah Nadeau, Ivan Topolsky, et al.
Environmental Research|March 18, 2026
Real-time outlier detection in digital PCR data for wastewater-based pathogen surveillanceRachel E McLeod, Timothy R Julian, Tanja Stadler, et al.
Systematic Biology|October 22, 2024
The Fossilized Birth-Death Model Is IdentifiableKate Truman, Timothy G Vaughan, Alex Gavryushkin, et al.
Systematic Biology|July 5, 2017
Taming the BEAST-A Community Teaching Material Resource for BEAST 2Joëlle Barido-Sottani, Veronika Bošková, Louis Du Plessis, et al.
Systematic Biology|October 24, 2015
Total-Evidence Dating under the Fossilized Birth-Death ProcessChi Zhang, Tanja Stadler, Seraina Klopfstein, et al.
Genetics|February 6, 2014
Exact vs. approximate computation: reconciling different estimates of Mycobacterium tuberculosis epidemiological parametersR Zachariah Aandahl, Tanja Stadler, Scott A Sisson, et al.
Virus Evolution|July 1, 2022
Epidemiological inference from pathogen genomes: A review of phylodynamic models and applicationsLeo A Featherstone, Joshua M Zhang, Timothy G Vaughan, et al.
Molecular Biology and Evolution|February 1, 2026
Viral Simulation Reveals Overestimation Bias in Within-Host Phylodynamic Migration Rate Estimates Under SelectionNicolas Ochsner, Judith Bouman, Timothy Vaughan, et al.
European Journal of Epidemiology|September 24, 2022
The methodologies to assess the effectiveness of non-pharmaceutical interventions during COVID-19: a systematic reviewNicolas Banholzer, Adrian Lison, Dennis Özcelik, et al.
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