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Systematic Biology|February 8, 2017
Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of PenguinsAlexandra Gavryushkina, Tracy A Heath, Daniel T Ksepka, et al.
Epidemics|June 9, 2018
Tuberculosis outbreak investigation using phylodynamic analysisDenise Kühnert, Mireia Coscolla, Daniela Brites, et al.
Virus Evolution|December 18, 2018
Tracking external introductions of HIV using phylodynamics reveals a major source of infections in rural KwaZulu-Natal, South AfricaDavid A Rasmussen, Eduan Wilkinson, Alain Vandormael, et al.
Microbial Genomics|September 5, 2025
Phylodynamic estimation of the within-host evolutionary rate of extended-spectrum beta-lactamase-producing EnterobacteralesEtthel M Windels, Lisandra Aguilar-Bultet, Isabelle Vock, et al.
Genetics|December 24, 2016
Inferring Ancestral Recombination Graphs from Bacterial Genomic DataTimothy G Vaughan, David Welch, Alexei J Drummond, et al.
Proceedings. Biological Sciences|October 14, 2011
Diversity-dependence brings molecular phylogenies closer to agreement with the fossil recordRampal S Etienne, Bart Haegeman, Tanja Stadler, et al.
Epidemics|July 13, 2021
Quantifying transmission fitness costs of multi-drug resistant tuberculosisJūlija Pečerska, Denise Kühnert, Conor J Meehan, et al.
Molecular Biology and Evolution|September 8, 2020
Bayesian Evaluation of Temporal Signal in Measurably Evolving PopulationsSebastian Duchene, Philippe Lemey, Tanja Stadler, et al.
Plos Computational Biology|November 11, 2024
EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filteringCiara Judge, Timothy Vaughan, Timothy Russell, et al.
Viruses|January 21, 2023
Comparative Epidemiology of Rabbit Haemorrhagic Disease Virus Strains from Viral Sequence DataCarlo Pacioni, Robyn N Hall, Tanja Strive, et al.
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