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Frontiers in Cellular and Infection Microbiology|June 18, 2020
IgM Antibody Repertoire Fingerprints in Mice Are Personalized but Robust to Viral Infection StatusAlexander Yermanos, Nike Julia Kräutler, Alessandro Pedrioli, et al.
Nature Communications|July 11, 2026
Real-time estimation of pathogen transmission dynamics from wastewaterAdrian Lison, Rachel E McLeod, Jana S Huisman, et al.
Water Research|August 27, 2025
Characterizing influenza A virus lineages and clinically relevant mutations through high-coverage wastewater sequencingAnika John, Seju Kang, Lara Fuhrmann, et al.
Elife|August 8, 2022
Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2Jana S Huisman, Jérémie Scire, Daniel C Angst, et al.
Bioinformatics (Oxford, England)|October 3, 2017
Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim)Alexander Yermanos, Victor Greiff, Nike Julia Krautler, et al.
Systematic Biology|May 24, 2022
The Occurrence Birth-Death Process for Combined-Evidence Analysis in Macroevolution and EpidemiologyJérémy Andréoletti, Antoine Zwaans, Rachel C M Warnock, et al.
BMC Bioinformatics|August 11, 2023
estimateR: an R package to estimate and monitor the effective reproductive numberJérémie Scire, Jana S Huisman, Ana Grosu, et al.
Molecular Ecology|October 27, 2015
Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupialCarlo Pacioni, Helen Hunt, Morten E Allentoft, et al.
Plos Computational Biology|April 9, 2019
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysisRemco Bouckaert, Timothy G Vaughan, Joëlle Barido-Sottani, et al.
Plos Computational Biology|March 14, 2012
Inferring epidemic contact structure from phylogenetic treesGabriel E Leventhal, Roger Kouyos, Tanja Stadler, et al.
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