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Epidemics|March 21, 2025
Onset of infectiousness explains differences in transmissibility across Mycobacterium tuberculosis lineagesEtthel M Windels, Cecilia Valenzuela Agüí, Bouke C de Jong, et al.
Nature Communications|August 12, 2025
Estimated transmission dynamics of SARS-CoV-2 variants from wastewater are unbiased and robust to differential sheddingDavid Dreifuss, Jana S Huisman, Johannes C Rusch, et al.
Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America|August 11, 2020
Identification of a Cluster of Extended-spectrum Beta-Lactamase-Producing Klebsiella pneumoniae Sequence Type 101 Isolated From Food and HumansLisandra Aguilar-Bultet, Claudia Bagutti, Adrian Egli, et al.
Biorxiv : the Preprint Server for Biology|August 12, 2025
Response to "No evidence that transmissible cancer has shifted from emergence to endemism in Tasmanian devils"Andrew Storfer, Mark J Margres, Christopher P Kozakiewicz, et al.
Molecular Biology and Evolution|September 6, 2011
Estimating the basic reproductive number from viral sequence dataTanja Stadler, Roger Kouyos, Viktor von Wyl, et al.
BMJ Open|February 19, 2018
Transmission of ESBL-producing Enterobacteriaceae and their mobile genetic elements-identification of sources by whole genome sequencing: study protocol for an observational study in SwitzerlandTanja Stadler, Dominik Meinel, Lisandra Aguilar-Bultet, et al.
The Lancet. Microbe|June 11, 2026
Wastewater-based sequencing of respiratory syncytial virus to investigate lineage dynamics and antigenic site mutations: a retrospective genomic epidemiology studyJolinda de Korne-Elenbaas, Auguste Rimaite, Ivan Topolsky, et al.
The Science of the Total Environment|July 28, 2024
Prospective One-Health investigation into low-abundant extended-spectrum β-lactamase producing Enterobacterales enables detection of potential dissemination events and persistenceAna B García-Martín, Lisandra Aguilar-Bultet, Elena Gómez-Sanz, et al.
American Journal of Epidemiology|May 14, 2014
Social meets molecular: Combining phylogenetic and latent class analyses to understand HIV-1 transmission in SwitzerlandDorita Avila, Olivia Keiser, Matthias Egger, et al.
Plos One|November 21, 2012
Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrixMark S Springer, Robert W Meredith, John Gatesy, et al.
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