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Science Translational Medicine|November 8, 2022
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome dataSarah A Nadeau, Timothy G Vaughan, Christiane Beckmann, et al.
Science Translational Medicine|December 22, 2017
Vaccination of dogs in an African city interrupts rabies transmission and reduces human exposureJakob Zinsstag, Monique Lechenne, Mirjam Laager, et al.
BMC Genomics|April 12, 2022
DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2Alexander Yermanos, Kai-Lin Hong, Andreas Agrafiotis, et al.
Nature Microbiology|July 19, 2022
Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJACKatharina Jahn, David Dreifuss, Ivan Topolsky, et al.
Applied and Environmental Microbiology|April 6, 2026
From clinics to sewers: leveraging environmental surveillance and whole genome sequencing to inform transmission of ESBL-Escherichia coli in SwitzerlandSheena Conforti, Louis du Plessis, Claudia Bagutti, et al.
Plos Pathogens|November 19, 2020
Characterising the epidemic spread of influenza A/H3N2 within a city through phylogeneticsNicola F Müller, Daniel Wüthrich, Nina Goldman, et al.
Molecular Biology and Evolution|January 6, 2017
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods ComparisonOliver Ratmann, Emma B Hodcroft, Michael Pickles, et al.
Frontiers in Microbiology|April 12, 2019
Earlier Initiation of Antiretroviral Treatment Coincides With an Initial Control of the HIV-1 Sub-Subtype F1 Outbreak Among Men-Having-Sex-With-Men in Flanders, BelgiumLore Vinken, Katrien Fransen, Lize Cuypers, et al.
Medrxiv : the Preprint Server for Health Sciences|July 2, 2020
Practical considerations for measuring the effective reproductive number, RKatelyn M Gostic, Lauren McGough, Edward B Baskerville, et al.
Plos Computational Biology|December 8, 2021
Correction: Practical considerations for measuring the effective reproductive number, RtKatelyn M Gostic, Lauren McGough, Edward B Baskerville, et al.
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