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Proceedings of the National Academy of Sciences of the United States of America|February 11, 2021
The origin and early spread of SARS-CoV-2 in EuropeSarah A Nadeau, Timothy G Vaughan, Jérémie Scire, et al.Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences|August 22, 2022
The effect of sequencing and assembly on the inference of horizontal gene transfer on chromosomal and plasmid phylogeniesJana S Huisman, Timothy G Vaughan, Adrian Egli, et al.Cambridge Prisms. Extinction|March 13, 2025
Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinctionBethany J Allen, Maria V Volkova Oliveira, Tanja Stadler, et al.Molecular Biology and Evolution|May 7, 2019
Estimating Epidemic Incidence and Prevalence from Genomic DataTimothy G Vaughan, Gabriel E Leventhal, David A Rasmussen, et al.Proceedings. Biological Sciences|April 17, 2015
How well can the exponential-growth coalescent approximate constant-rate birth-death population dynamics?Tanja Stadler, Timothy G Vaughan, Alex Gavryushkin, et al.Systematic Biology|July 6, 2021
Novel Integrative Modeling of Molecules and Morphology across Evolutionary TimescalesHuw A Ogilvie, Fábio K Mendes, Timothy G Vaughan, et al.Mathematical Biosciences|October 16, 2008
Lineages-through-time plots of neutral models for speciationTanja StadlerSystematic Biology|April 13, 2011
Simulating trees with a fixed number of extant speciesTanja StadlerProceedings of the National Academy of Sciences of the United States of America|March 30, 2011
Mammalian phylogeny reveals recent diversification rate shiftsTanja StadlerGenetics|May 7, 2011
Inferring epidemiological parameters on the basis of allele frequenciesTanja StadlerPageof 21