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Plos Computational Biology|August 19, 2022
TreeKnit: Inferring ancestral reassortment graphs of influenza virusesPierre Barrat-Charlaix, Timothy G Vaughan, Richard A NeherClinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America|October 10, 2015
Molecular Approaches to Understanding Transmission and Source Attribution in Nontyphoidal Salmonella and Their Application in AfricaAlison E Mather, Timothy G Vaughan, Nigel P FrenchJournal of Theoretical Biology|December 24, 2019
The probability distribution of the reconstructed phylogenetic tree with occurrence dataAnkit Gupta, Marc Manceau, Timothy Vaughan, et al.Molecular Biology and Evolution|December 9, 2017
Bayesian Inference of Species Networks from Multilocus Sequence DataChi Zhang, Huw A Ogilvie, Alexei J Drummond, et al.Systematic Biology|August 26, 2011
Branch lengths on birth-death trees and the expected loss of phylogenetic diversityArne Mooers, Olivier Gascuel, Tanja Stadler, et al.Genome Biology and Evolution|October 12, 2013
On the need for mechanistic models in computational genomics and metagenomicsDavid A Liberles, Ashley I Teufel, Liang Liu, et al.Nature Communications|December 12, 2018
Closing the gap between palaeontological and neontological speciation and extinction rate estimatesDaniele Silvestro, Rachel C M Warnock, Alexandra Gavryushkina, et al.The American Naturalist|September 17, 2014
On age and species richness of higher taxaTanja Stadler, Daniel L Rabosky, Robert E Ricklefs, et al.Plos Computational Biology|March 29, 2017
Phylodynamics on local sexual contact networksDavid A Rasmussen, Roger Kouyos, Huldrych F Günthard, et al.Plos Currents|February 3, 2015
Insights into the early epidemic spread of ebola in sierra leone provided by viral sequence dataTanja Stadler, Denise Kühnert, David A Rasmussen, et al.Pageof 21