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Frontiers in Chemistry|February 1, 2021
Development of a TSR-Based Method for Protein 3-D Structural Comparison With Its Applications to Protein Classification and Motif DiscoverySarika Kondra, Titli Sarkar, Vijay Raghavan, et al.
Arxiv|November 28, 2024
Integrating Secondary Structures Information into Triangular Spatial Relationships (TSR) for Advanced Protein ClassificationPoorya Khajouie, Titli Sarkar, Krishna Rauniyar, et al.
Data in Brief|November 25, 2022
The specific applications of the TSR-based method in identifying Zn2+ binding sites of proteases and ACE/ACE2Titli Sarkar, Camille R Reaux, Jianxiong Li, et al.
IEEE Transactions on Computational Biology and Bioinformatics|January 14, 2026
SSE-TSR: An Approach to Integrate Secondary Structure Elements into Triangular Spatial Relationships for Protein ClassificationPoorya Khajouie, Titli Sarkar, Krishna Rauniyar, et al.
Computational Biology and Chemistry|May 5, 2021
Exploring the effectiveness of the TSR-based protein 3-D structural comparison method for protein clustering, and structural motif identification and discovery of protein kinases, hydrolases, and SARS-CoV-2's protein via the application of amino acid groupingTitli Sarkar, Vijay V Raghavan, Feng Chen, et al.
Computational Biology and Chemistry|February 8, 2023
Introducing mirror-image discrimination capability to the TSR-based method for capturing stereo geometry and understanding hierarchical structure relationships of protein receptor familyTitli Sarkar, Yuwu Chen, Yu Wang, et al.
Frontiers in Chemistry|April 3, 2025
Development of the TSR-based computational method to investigate spike and monoclonal antibody interactionsTarikul I Milon, Titli Sarkar, Yixin Chen, et al.
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